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I'm still new to bash and I've found similar questions to mine, but i still can't solve my problem. I have two files with 2 columns each, separated by a space.
file 1:
1 AGCATTTTTCAAACGAAAGATTTACTACCGATGTGT
2 TGCTCACCAACAAAAACAGGCGTCTCAGCAGCAGCA
3 GATCGAACCGGCTGCCTACTGCGTGTAAAGCCGCCC
4 CCGACACAGAGAACATTAGAATACTCAGAGCCATNN
5 TAAGCCTGAGCCTAAACCTAAGCCTAAACATAAGAA
6 AGCAGAGAAGAGATGAGTTGTCGAGTGAGGCGTAAG
7 AACGTTGAAAAATTATCCCGTCAACAGTCTCCAGAA
8 GCCAGAGAGTAAAATATTGGGTGAAGCCAGAGAGTA
9 TGCTCACCAACAAAAACAGGCGTCTCAGCAGCAGCA
file 2:
1 AGCATTTTTCAAACGAAAGATTTACTACCGATGTGT
2 TGCTCACCAACAAAAACAGGCGTCTCAGCAGCAGCA
3 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
4 CCGACACAGAGAACATTAGAATACTCAGAGCCATNN
5 TAAGCCTGAGCCTAAACCTAAGCCTAAACATAAGAA
6 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
7 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
8 GCCAGAGAGTAAAATATTGGGTGAAGCCAGAGAGTA
9 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
I'd like to compare only the second columns of each file, line by line, and output a third file with only the non-matching lines.
output:
3 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
6 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
7 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
9 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
asked 1 min ago
find non-matching lines of two files bash
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